dmr_percent2plot

Plot the percentage of DMRs in predefined genomic regions or predicted chromatin segment regions.

Required

• -inCFolder IN_COUNTFILE_FOLDER or --in_countFile_folder IN_COUNTFILE_FOLDER: Input path of a file folder that contains a count table of DMRs in predefined genomic regions exported by dmr_cal2genome_percent.

• -inCFname IN_COUNTFILE_NAME or --in_countFile_name IN_COUNTFILE_NAME: Input file name of the count table for DMR/MRs in predefined genomic regions, for example, an exported file from dmr_cal2chromSegment_percent or dmr_cal2genome_percent.

Optional

• -LsOrGt or --in_Ls_or_Gt_pval: Use less (0) or greater (1) than the probability value cutoff to search for DMRs. The default is 1, which uses a greater than probability value as the cutoff to select DMRs.

• -inLRpb or --in_LogReg_proba: A probability value used by logistic Regression to select DMRs. The default is 0.8.